19992020

Research output per year

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Research Output

2020

Fetal membrane bacterial load is increased in histologically confirmed inflammatory chorioamnionitis: A retrospective cohort study

Hockney, R., Cummings, S., Taylor, G., Orr, C., Waring, G., Nelson, A. & Robson, S., 21 Jan 2020, In : Placenta. 91, p. 43-51 9 p.

Research output: Contribution to journalArticle

File
110 Downloads (Pure)
2018

Bifidobacteria: Shield or strain on the gut of preterm infants?

Clements, E., Orr, C., Taylor, G., Cummings, S., Nelson, A., Stewart, C., Embleton, N. & Berrington, J., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

Effect of lead, cadmium, and mercury co‐contaminants onbiodegradation in PAH‐polluted soils

Deary, M., Ekumankama, C. & Cummings, S., 6 Apr 2018, In : Land Degradation & Development. 29, 6, p. 1583-1594 11 p.

Research output: Contribution to journalArticle

Open Access
File
86 Downloads (Pure)

Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients

Powell, J., Garnett, J. P., Mather, M. W., Cooles, F. A. H., Nelson, A., Verdon, B., Scott, J., Jiwa, K., Ruchaud-Sparagano, M-H., Cummings, S., Perry, J. D., Wright, S. E., Wilson, J. A., Pearson, J., Ward, C. & Simpson, A. J., 1 Aug 2018, In : American Journal of Respiratory and Critical Care Medicine. 198, 3, p. 340-349 10 p.

Research output: Contribution to journalArticle

Open Access
File
214 Downloads (Pure)

Response: Commentary: Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G. R., Smith, D. L., Embleton, N. D., Berrington, J. E., Schwalbe, E. C., Cummings, S. P., Van Der Gast, C. J. & Lanyon, C., 24 Oct 2018, In : Frontiers in cellular and infection microbiology. 8, 2 p., 374.

Research output: Contribution to journalArticle

Open Access
File
54 Downloads (Pure)

The Microbiome of the Healthy Preterm Infant: To Thrive or Not to Thrive

Ross, C., Orr, C., Taylor, G., Cummings, S., Nelson, A., Stewart, C., Embleton, N. & Berrington, J., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

The Role of the Placental Microbiome in Chorioamnionitis

Hockney, R., Orr, C., Taylor, G., Nelson, A. & Cummings, S., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

2017

Cesarean or vaginal birth does not impact the longitudinal development of the gut microbiome in a cohort of exclusively preterm infants

Stewart, C. J., Embleton, N., Clements, E., Luna, P. N., Smith, D. P., Nelson, A., Taylor, G., Orr, C., Petrosino, J. F., Berrington, J. & Cummings, S., 6 Jun 2017, In : Frontiers in Microbiology.

Research output: Contribution to journalArticle

Open Access
File
136 Downloads (Pure)

Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study.

Stewart, C., Nelson, A., Campbell, M. D., Walker, M., Stevenson, E. J., Shaw, J. A., Cummings, S. & West, D. J., 31 Jan 2017, In : Diabetic Medicine: A Journal of the British Diabetic Association. 34, 1, p. 127-134

Research output: Contribution to journalArticle

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

Stewart, C. J., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Fofanova, T., Nelson, A., Skeath, T., Perry, J. D. J., Petrosino, J. F., Berrington, J. & Cummings, S., 12 Jul 2017, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
129 Downloads (Pure)

Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G., Smith, D. L., Embleton, N., Berrington, J., Schwalbe, E. C., Cummings, S., van der Gast, C. J. & Lanyon, C., 6 Jun 2017, In : Frontiers in cellular and infection microbiology. p. -

Research output: Contribution to journalArticle

Open Access
File
121 Downloads (Pure)
2016

A novel culture medium for isolation of rapidly-growing mycobacteria from the sputum of patients with cystic fibrosis

Preece, C. L., Perry, A., Gray, B., Kenna, D. T., Jones, A. L., Cummings, S., Robb, A., Thomas, M. F., Brodlie, M., O'Brien, C., Bourke, S. J. & Perry, J. D., 2016

Research output: Other contribution

Open Access

Evaluation of Various Culture Media for Detection of Rapidly-Growing Mycobacteria from Patients with Cystic Fibrosis.

Preece, C., Wichelhaus, T., Perry, A., Jones, A. L., Cummings, S., Perry, J. D. J. & Hogardt, M., 24 Jun 2016, In : Journal of Clinical Microbiology. 54, p. 1797–1803

Research output: Contribution to journalArticle

Open Access
File
148 Downloads (Pure)

Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency

Lane, J. P., Stewart, C., Cummings, S. & Gennery, A. R., 31 Aug 2016, In : Journal of Allergy and Clinical Immunology. 138, 2, p. 622–625.e3

Research output: Contribution to journalLetter

Open Access
File
138 Downloads (Pure)

Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients.

Al-Momani, H., Perry, A., Stewart, C., Jones, R., Krishnan, A., Robertson, A. G., Bourke, S. J., Doe, S., Cummings, S., Anderson, A., Forrest, T., Griffin, S. M., Brodlie, M., Pearson, J. & Ward, C., 1 Jun 2016, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
File
136 Downloads (Pure)

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 10 Feb 2016, In : Neonatology.

Research output: Contribution to journalArticle

Open Access

Stool bacterial load in preterm infants with necrotising enterocolitis

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 16 Feb 2016, In : Early Human Development. p. -

Research output: Contribution to journalArticle

Open Access

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, C., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Nelson, A., Abdulkadir, B., Skeath, T., Petrosino, J. F., Perry, J. D. J., Berrington, J. & Cummings, S., 29 Dec 2016, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
148 Downloads (Pure)
2015

61 Comparison of two chromogenic media for isolation of Staphylococcus aureus from respiratory samples from patients with cystic fibrosis

Preece, C. L. C., Perry, A., Jones, A. L., Cummings, S., Bourke, S. J. & Perry, J. D. J., 2015

Research output: Other contribution

Open Access

A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients

Tariq, M. A. M., Everest, F. L. C. F., Cowley, L. A., De Soyza, A., Holt, G. S., Bridge, S. H., Perry, A., Perry, J. D. J., Bourke, S. J., Cummings, S., Lanyon, C., Barr, J. J. & Smith, D. L., 18 Feb 2015, In : Frontiers in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Cytomegalovirus and other common enteric viruses are not commonly associated with Necrotizing Enterocolitis

Skeath, T., Stewart, C., Waugh, S., Embleton, N., Cummings, S. & Berrington, J., 31 Aug 2015, In : Acta Paediatrica. p. -

Research output: Contribution to journalArticle

Open Access

Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants.

Deary, M. E., Ekumankama, C. C. & Cummings, S., 11 Dec 2015, In : Journal of Hazardous Materials. p. 240-252

Research output: Contribution to journalArticle

Open Access
Open Access

Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey

Zarakolu, P., Day, K. M., Sidjabat, H. E., Kamolvit, W., Lanyon, C., Cummings, S., Paterson, D. L., Akova, M. & Perry, J. D. J., 2015, In : European Journal of Clinical Microbiology & Infectious Diseases. p. -

Research output: Contribution to journalArticle

Open Access

Gut bacteria and necrotizing enterocolitis: cause or effect?

Stewart, C. & Cummings, S., 2015, In : Trends in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency.

Lane, J. P., Stewart, C., Cummings, S. & Gennery, A. R., 2015, In : The Journal of allergy and clinical immunology. p. -

Research output: Contribution to journalArticle

Open Access

Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis

Stewart, C. J., Nelson, A., Treumann, A., Skeath, T., Cummings, S., Embleton, N. & Berrington, J., 2015, In : Pediatric Research. p. -

Research output: Contribution to journalArticle

Open Access

Preterm gut microbiota and metabolome following discharge from intensive care

Stewart, C., Skeath, T., Nelson, A., Fernstad, S. J., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Berrington, J. & Embleton, N., 24 Nov 2015, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
2014

Polymicrobial airway bacterial communities in adult bronchiectasis patients

Purcell, P., Jary, H., Perry, A., Perry, J. D. J., Stewart, C., Nelson, A., Lanyon, C., Smith, D. L., Cummings, S. & De Soyza, A., 20 May 2014, In : BMC Microbiology.

Research output: Contribution to journalArticle

Open Access

Proportionate reduction in uncertainty of late onset infection in preterm infants by neutrophil CD64 measurement

Berrington, J., Hearn, R. I., Hall, C., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Fetal & Pediatric Pathology. p. -

Research output: Contribution to journalArticle

The nasopharyngeal microbiota: an important window of opportunity

Berrington, J., Cummings, S. & Embleton, N., 2014, In : American Journal of Respiratory and Critical Care Medicine. p. -

Research output: Contribution to journalArticle

The neonatal bowel microbiome in health and infection

Berrington, J., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Current Opinion in Infectious Diseases Journal. p. -

Research output: Contribution to journalArticle

2013

Bacterial and fungal viability in the preterm gut: NEC and sepsis

Stewart, C. J., Nelson, A., Scribbins, D., Marrs, E. C. L., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., Jul 2013, In : Archives of Disease in Childhood - Fetal and Neonatal Edition. 98, 4

Research output: Contribution to journalArticle

Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway

Nelson, A., Perry, A., Perry, J. D., Bourke, S. J., Cummings, S. P. & De Soyza, A., 1 Apr 2013, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 103, 4, p. 755-762 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis

Stewart, C. J., Marrs, E. C. L., Nelson, A., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., 30 Aug 2013, In : PLoS ONE. 8, 8, e73465.

Research output: Contribution to journalArticle

67 Citations (Scopus)
2012
Open Access
File
26 Citations (Scopus)
133 Downloads (Pure)

Polymicrobial challenges to Koch's postulates: Ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes

Nelson, A., De Soyza, A., Perry, J. D., Sutcliffe, I. C. & Cummings, S. P., 1 Oct 2012, In : Innate Immunity. 18, 5, p. 774-783 10 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2011

Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada

Lim, J., Woodward, J., Tulaczyk, S., Christoffersen, P. & Cummings, S. P., 1 Feb 2011, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 99, 2, p. 423-430 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Diversity and activity of free-living nitrogen-fixing bacteria and total bacteria in organic and conventionally managed soils

Orr, C. H., James, A., Leifert, C., Cooper, J. M. & Cummings, S. P., 1 Feb 2011, In : Applied and Environmental Microbiology. 77, 3, p. 911-919 9 p.

Research output: Contribution to journalArticle

File
63 Citations (Scopus)
177 Downloads (Pure)

The role of plant growth promoting rhizobacteria in sustainable and low-input graminaceous crop production

Cummings, S. P. & Orr, C. H., 2011, Plant Growth and Health Promoting Bacteria. Maheshwari, D. K. (ed.). Heidleberg: Springer, Vol. 18. p. 297-317 (Microbiology Monographs ).

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis

Nelson, A., De Soyza, A., Bourke, S. J., Perry, J. D. & Cummings, S. P., 1 Sep 2010, In : Letters in Applied Microbiology. 51, 3, p. 272-277 6 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2009

Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia

Cummings, S. P., Gyaneshwar, P., Vinuesa, P., Farruggia, F. T., Andrews, M., Humphry, D., Elliott, G. N., Nelson, A., Orr, C., Pettitt, D., Shah, G. R., Santos, S. R., Krishnan, H. B., Odee, D., Moreira, F. M. S., Sprent, J. I., Young, J. P. W. & James, E. K., 1 Oct 2009, In : Environmental Microbiology. 11, 10, p. 2510-2525 16 p.

Research output: Contribution to journalArticle

56 Citations (Scopus)

The effect of organic and conventional farming practices on the soil microbial community carbon substrate utilization

Orr, C. H., Cummings, S. P., Leifert, C. & Cooper, J. M., 2009, International Conference on Positive Plant Microbial Interactions in Relation to Plant Performance and Ecosystem Function. Warwick: the Association of Applied Biologists, p. 67-74

Research output: Chapter in Book/Report/Conference proceedingConference contribution

24 Citations (Scopus)
1 Citation (Scopus)
2008

The degradation of the herbicide bromoxynil and its impact on bacterial diversity in a top soil

Baxter, J. & Cummings, S. P., 1 Jun 2008, In : Journal of Applied Microbiology. 104, 6, p. 1605-1616 12 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

The structure and stability of microbial communities in metallophytic grassland soils that have been subjected to long term contamination by heavy metals

Cummings, S. P. & Bamborough, L., 1 Jan 2008, Microbial Ecology Research Trends. Nova Science Publishers, Inc., p. 169-205 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2007

Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia

Humphry, D. R., Andrews, M., Santos, S. R., James, E. K., Vinogradova, L. V., Perin, L., Reis, V. M. & Cummings, S. P., 1 Feb 2007, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 91, 2, p. 105-113 9 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2006
6 Citations (Scopus)
74 Citations (Scopus)