19992020

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Article
2020

Fetal membrane bacterial load is increased in histologically confirmed inflammatory chorioamnionitis: A retrospective cohort study

Hockney, R., Cummings, S., Taylor, G., Orr, C., Waring, G., Nelson, A. & Robson, S., 21 Jan 2020, In : Placenta. 91, p. 43-51 9 p.

Research output: Contribution to journalArticle

File
140 Downloads (Pure)
2018

Effect of lead, cadmium, and mercury co‐contaminants onbiodegradation in PAH‐polluted soils

Deary, M., Ekumankama, C. & Cummings, S., 6 Apr 2018, In : Land Degradation & Development. 29, 6, p. 1583-1594 11 p.

Research output: Contribution to journalArticle

Open Access
File
95 Downloads (Pure)

Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients

Powell, J., Garnett, J. P., Mather, M. W., Cooles, F. A. H., Nelson, A., Verdon, B., Scott, J., Jiwa, K., Ruchaud-Sparagano, M-H., Cummings, S., Perry, J. D., Wright, S. E., Wilson, J. A., Pearson, J., Ward, C. & Simpson, A. J., 1 Aug 2018, In : American Journal of Respiratory and Critical Care Medicine. 198, 3, p. 340-349 10 p.

Research output: Contribution to journalArticle

Open Access
File
226 Downloads (Pure)

Response: Commentary: Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G. R., Smith, D. L., Embleton, N. D., Berrington, J. E., Schwalbe, E. C., Cummings, S. P., Van Der Gast, C. J. & Lanyon, C., 24 Oct 2018, In : Frontiers in cellular and infection microbiology. 8, 2 p., 374.

Research output: Contribution to journalArticle

Open Access
File
60 Downloads (Pure)
2017

Cesarean or vaginal birth does not impact the longitudinal development of the gut microbiome in a cohort of exclusively preterm infants

Stewart, C. J., Embleton, N., Clements, E., Luna, P. N., Smith, D. P., Nelson, A., Taylor, G., Orr, C., Petrosino, J. F., Berrington, J. & Cummings, S., 6 Jun 2017, In : Frontiers in Microbiology.

Research output: Contribution to journalArticle

Open Access
File
148 Downloads (Pure)

Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study.

Stewart, C., Nelson, A., Campbell, M. D., Walker, M., Stevenson, E. J., Shaw, J. A., Cummings, S. & West, D. J., 31 Jan 2017, In : Diabetic Medicine: A Journal of the British Diabetic Association. 34, 1, p. 127-134

Research output: Contribution to journalArticle

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

Stewart, C. J., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Fofanova, T., Nelson, A., Skeath, T., Perry, J. D. J., Petrosino, J. F., Berrington, J. & Cummings, S., 12 Jul 2017, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
147 Downloads (Pure)

Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G., Smith, D. L., Embleton, N., Berrington, J., Schwalbe, E. C., Cummings, S., van der Gast, C. J. & Lanyon, C., 6 Jun 2017, In : Frontiers in cellular and infection microbiology. p. -

Research output: Contribution to journalArticle

Open Access
File
142 Downloads (Pure)
2016

Evaluation of Various Culture Media for Detection of Rapidly-Growing Mycobacteria from Patients with Cystic Fibrosis.

Preece, C., Wichelhaus, T., Perry, A., Jones, A. L., Cummings, S., Perry, J. D. J. & Hogardt, M., 24 Jun 2016, In : Journal of Clinical Microbiology. 54, p. 1797–1803

Research output: Contribution to journalArticle

Open Access
File
167 Downloads (Pure)

Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients.

Al-Momani, H., Perry, A., Stewart, C., Jones, R., Krishnan, A., Robertson, A. G., Bourke, S. J., Doe, S., Cummings, S., Anderson, A., Forrest, T., Griffin, S. M., Brodlie, M., Pearson, J. & Ward, C., 1 Jun 2016, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
File
170 Downloads (Pure)

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 10 Feb 2016, In : Neonatology.

Research output: Contribution to journalArticle

Open Access

Stool bacterial load in preterm infants with necrotising enterocolitis

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 16 Feb 2016, In : Early Human Development. p. -

Research output: Contribution to journalArticle

Open Access

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, C., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Nelson, A., Abdulkadir, B., Skeath, T., Petrosino, J. F., Perry, J. D. J., Berrington, J. & Cummings, S., 29 Dec 2016, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
164 Downloads (Pure)
2015

A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients

Tariq, M. A. M., Everest, F. L. C. F., Cowley, L. A., De Soyza, A., Holt, G. S., Bridge, S. H., Perry, A., Perry, J. D. J., Bourke, S. J., Cummings, S., Lanyon, C., Barr, J. J. & Smith, D. L., 18 Feb 2015, In : Frontiers in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Cytomegalovirus and other common enteric viruses are not commonly associated with Necrotizing Enterocolitis

Skeath, T., Stewart, C., Waugh, S., Embleton, N., Cummings, S. & Berrington, J., 31 Aug 2015, In : Acta Paediatrica. p. -

Research output: Contribution to journalArticle

Open Access

Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants.

Deary, M. E., Ekumankama, C. C. & Cummings, S., 11 Dec 2015, In : Journal of Hazardous Materials. p. 240-252

Research output: Contribution to journalArticle

Open Access
Open Access

Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey

Zarakolu, P., Day, K. M., Sidjabat, H. E., Kamolvit, W., Lanyon, C., Cummings, S., Paterson, D. L., Akova, M. & Perry, J. D. J., 2015, In : European Journal of Clinical Microbiology & Infectious Diseases. p. -

Research output: Contribution to journalArticle

Open Access

Gut bacteria and necrotizing enterocolitis: cause or effect?

Stewart, C. & Cummings, S., 2015, In : Trends in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency.

Lane, J. P., Stewart, C., Cummings, S. & Gennery, A. R., 2015, In : The Journal of allergy and clinical immunology. p. -

Research output: Contribution to journalArticle

Open Access

Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis

Stewart, C. J., Nelson, A., Treumann, A., Skeath, T., Cummings, S., Embleton, N. & Berrington, J., 2015, In : Pediatric Research. p. -

Research output: Contribution to journalArticle

Open Access

Preterm gut microbiota and metabolome following discharge from intensive care

Stewart, C., Skeath, T., Nelson, A., Fernstad, S. J., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Berrington, J. & Embleton, N., 24 Nov 2015, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
2014

Polymicrobial airway bacterial communities in adult bronchiectasis patients

Purcell, P., Jary, H., Perry, A., Perry, J. D. J., Stewart, C., Nelson, A., Lanyon, C., Smith, D. L., Cummings, S. & De Soyza, A., 20 May 2014, In : BMC Microbiology.

Research output: Contribution to journalArticle

Open Access

Proportionate reduction in uncertainty of late onset infection in preterm infants by neutrophil CD64 measurement

Berrington, J., Hearn, R. I., Hall, C., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Fetal & Pediatric Pathology. p. -

Research output: Contribution to journalArticle

The nasopharyngeal microbiota: an important window of opportunity

Berrington, J., Cummings, S. & Embleton, N., 2014, In : American Journal of Respiratory and Critical Care Medicine. p. -

Research output: Contribution to journalArticle

The neonatal bowel microbiome in health and infection

Berrington, J., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Current Opinion in Infectious Diseases Journal. p. -

Research output: Contribution to journalArticle

2013

Bacterial and fungal viability in the preterm gut: NEC and sepsis

Stewart, C. J., Nelson, A., Scribbins, D., Marrs, E. C. L., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., Jul 2013, In : Archives of Disease in Childhood - Fetal and Neonatal Edition. 98, 4

Research output: Contribution to journalArticle

Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway

Nelson, A., Perry, A., Perry, J. D., Bourke, S. J., Cummings, S. P. & De Soyza, A., 1 Apr 2013, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 103, 4, p. 755-762 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis

Stewart, C. J., Marrs, E. C. L., Nelson, A., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., 30 Aug 2013, In : PLoS ONE. 8, 8, e73465.

Research output: Contribution to journalArticle

67 Citations (Scopus)
2012
Open Access
File
26 Citations (Scopus)
172 Downloads (Pure)

Polymicrobial challenges to Koch's postulates: Ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes

Nelson, A., De Soyza, A., Perry, J. D., Sutcliffe, I. C. & Cummings, S. P., 1 Oct 2012, In : Innate Immunity. 18, 5, p. 774-783 10 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2011

Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada

Lim, J., Woodward, J., Tulaczyk, S., Christoffersen, P. & Cummings, S. P., 1 Feb 2011, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 99, 2, p. 423-430 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Diversity and activity of free-living nitrogen-fixing bacteria and total bacteria in organic and conventionally managed soils

Orr, C. H., James, A., Leifert, C., Cooper, J. M. & Cummings, S. P., 1 Feb 2011, In : Applied and Environmental Microbiology. 77, 3, p. 911-919 9 p.

Research output: Contribution to journalArticle

File
63 Citations (Scopus)
263 Downloads (Pure)
2010

Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis

Nelson, A., De Soyza, A., Bourke, S. J., Perry, J. D. & Cummings, S. P., 1 Sep 2010, In : Letters in Applied Microbiology. 51, 3, p. 272-277 6 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2009

Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia

Cummings, S. P., Gyaneshwar, P., Vinuesa, P., Farruggia, F. T., Andrews, M., Humphry, D., Elliott, G. N., Nelson, A., Orr, C., Pettitt, D., Shah, G. R., Santos, S. R., Krishnan, H. B., Odee, D., Moreira, F. M. S., Sprent, J. I., Young, J. P. W. & James, E. K., 1 Oct 2009, In : Environmental Microbiology. 11, 10, p. 2510-2525 16 p.

Research output: Contribution to journalArticle

56 Citations (Scopus)
24 Citations (Scopus)
1 Citation (Scopus)
2008

The degradation of the herbicide bromoxynil and its impact on bacterial diversity in a top soil

Baxter, J. & Cummings, S. P., 1 Jun 2008, In : Journal of Applied Microbiology. 104, 6, p. 1605-1616 12 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)
2007

Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia

Humphry, D. R., Andrews, M., Santos, S. R., James, E. K., Vinogradova, L. V., Perin, L., Reis, V. M. & Cummings, S. P., 1 Feb 2007, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 91, 2, p. 105-113 9 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2006
6 Citations (Scopus)

The impact of acrylonitrile and bioaugmentation on the biodegradation activity and bacterial community structure of a topsoil

Baxter, J., Garton, N. J. & Cummings, S. P., 1 Dec 2006, In : Folia Microbiologica. 51, 6, p. 591-597 7 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

The impact of bioaugmentation on metal cyanide degradation and soil bacteria community structure

Baxter, J. & Cummings, S. P., 1 Jun 2006, In : Biodegradation. 17, 3, p. 207-217 11 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2003
Open Access
4 Citations (Scopus)
21 Citations (Scopus)
2001

Potassium uptake and retention by Oceanomonas baumannii at low water activity in the presence of phenol

Brown, G. R. & Cummings, S. P., 27 Nov 2001, In : FEMS Microbiology Letters. 205, 1, p. 37-41 5 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)
2000

The modification of the membrane of Oceanomonas baumannii(T) when subjected to both osmotic and organic solvent stress

Brown, G. R., Sutcliffe, I. C., Bendell, D. & Cummings, S. P., 15 Aug 2000, In : FEMS Microbiology Letters. 189, 2, p. 149-154 6 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)