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2020
4 Downloads (Pure)

Fetal membrane bacterial load is increased in histologically confirmed inflammatory chorioamnionitis: A retrospective cohort study

Hockney, R., Cummings, S., Taylor, G., Orr, C., Waring, G., Nelson, A. & Robson, S., 21 Jan 2020, In : Placenta. 91, p. 43-51 9 p.

Research output: Contribution to journalArticle

File
Chorioamnionitis
Extraembryonic Membranes
Bacterial Load
Cohort Studies
Retrospective Studies
2018

Bifidobacteria: Shield or strain on the gut of preterm infants?

Clements, E., Orr, C., Taylor, G., Cummings, S., Nelson, A., Stewart, C., Embleton, N. & Berrington, J., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

71 Downloads (Pure)

Effect of lead, cadmium, and mercury co‐contaminants onbiodegradation in PAH‐polluted soils

Deary, M., Ekumankama, C. & Cummings, S., 6 Apr 2018, In : Land Degradation & Development. 29, 6, p. 1583-1594 11 p.

Research output: Contribution to journalArticle

Open Access
File
Polycyclic aromatic hydrocarbons
Mercury
Cadmium
mercury
cadmium
138 Downloads (Pure)

Excess Mucin Impairs Subglottic Epithelial Host Defense in Mechanically Ventilated Patients

Powell, J., Garnett, J. P., Mather, M. W., Cooles, F. A. H., Nelson, A., Verdon, B., Scott, J., Jiwa, K., Ruchaud-Sparagano, M-H., Cummings, S., Perry, J. D., Wright, S. E., Wilson, J. A., Pearson, J., Ward, C. & Simpson, A. J., 1 Aug 2018, In : American Journal of Respiratory and Critical Care Medicine. 198, 3, p. 340-349 10 p.

Research output: Contribution to journalArticle

Open Access
File
Mucins
Neutrophils
Expectorants
Ventilator-Associated Pneumonia
Mucus
35 Downloads (Pure)

Response: Commentary: Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G. R., Smith, D. L., Embleton, N. D., Berrington, J. E., Schwalbe, E. C., Cummings, S. P., Van Der Gast, C. J. & Lanyon, C., 24 Oct 2018, In : Frontiers in cellular and infection microbiology. 8, 2 p., 374.

Research output: Contribution to journalArticle

Open Access
File

The Microbiome of the Healthy Preterm Infant: To Thrive or Not to Thrive

Ross, C., Orr, C., Taylor, G., Cummings, S., Nelson, A., Stewart, C., Embleton, N. & Berrington, J., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

The Role of the Placental Microbiome in Chorioamnionitis

Hockney, R., Orr, C., Taylor, G., Nelson, A. & Cummings, S., 9 Apr 2018, p. -.

Research output: Contribution to conferencePoster

2017
93 Downloads (Pure)

Cesarean or vaginal birth does not impact the longitudinal development of the gut microbiome in a cohort of exclusively preterm infants

Stewart, C. J., Embleton, N., Clements, E., Luna, P. N., Smith, D. P., Nelson, A., Taylor, G., Orr, C., Petrosino, J. F., Berrington, J. & Cummings, S., 6 Jun 2017, In : Frontiers in Microbiology.

Research output: Contribution to journalArticle

Open Access
File
Premature Infants
Parturition
Neonatal Intensive Care Units
Term Birth
Bacteroides

Gut microbiota of Type 1 diabetes patients with good glycaemic control and high physical fitness is similar to people without diabetes: an observational study.

Stewart, C., Nelson, A., Campbell, M. D., Walker, M., Stevenson, E. J., Shaw, J. A., Cummings, S. & West, D. J., 31 Jan 2017, In : Diabetic medicine : a journal of the British Diabetic Association. 34, 1, p. 127-134

Research output: Contribution to journalArticle

Physical Fitness
Type 1 Diabetes Mellitus
Observational Studies
Environmental Exposure
Genetic Predisposition to Disease
89 Downloads (Pure)

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls

Stewart, C. J., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Fofanova, T., Nelson, A., Skeath, T., Perry, J. D. J., Petrosino, J. F., Berrington, J. & Cummings, S., 12 Jul 2017, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
Metabolome
Sepsis
Bifidobacterium
Newborn Infant
Raffinose
83 Downloads (Pure)

Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis

Young, G., Smith, D. L., Embleton, N., Berrington, J., Schwalbe, E. C., Cummings, S., van der Gast, C. J. & Lanyon, C., 6 Jun 2017, In : Frontiers in cellular and infection microbiology. p. -

Research output: Contribution to journalArticle

Open Access
File
Necrotizing Enterocolitis
Premature Infants
Sepsis
Microbiota
rRNA Genes
2016

A novel culture medium for isolation of rapidly-growing mycobacteria from the sputum of patients with cystic fibrosis

Preece, C. L., Perry, A., Gray, B., Kenna, D. T., Jones, A. L., Cummings, S., Robb, A., Thomas, M. F., Brodlie, M., O'Brien, C., Bourke, S. J. & Perry, J. D., 2016

Research output: Other contribution

Open Access
95 Downloads (Pure)

Evaluation of Various Culture Media for Detection of Rapidly-Growing Mycobacteria from Patients with Cystic Fibrosis.

Preece, C., Wichelhaus, T., Perry, A., Jones, A. L., Cummings, S., Perry, J. D. J. & Hogardt, M., 24 Jun 2016, In : Journal of Clinical Microbiology. 54, p. 1797–1803

Research output: Contribution to journalArticle

Open Access
File
Mycobacterium
Cystic Fibrosis
Culture Media
Sputum
Agar
90 Downloads (Pure)

Functional changes in gut microbiota during hematopoietic stem cell transplantation for severe combined immunodeficiency

Lane, J. P., Stewart, C., Cummings, S. & Gennery, A. R., 31 Aug 2016, In : Journal of Allergy and Clinical Immunology. 138, 2, p. 622–625.e3

Research output: Contribution to journalLetter

Open Access
File
84 Downloads (Pure)

Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients.

Al-Momani, H., Perry, A., Stewart, C., Jones, R., Krishnan, A., Robertson, A. G., Bourke, S. J., Doe, S., Cummings, S., Anderson, A., Forrest, T., Griffin, S. M., Brodlie, M., Pearson, J. & Ward, C., 1 Jun 2016, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
File
Gastric Juice
Sputum
Cystic Fibrosis
Fibrosis
Microbiota

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 10 Feb 2016, In : Neonatology.

Research output: Contribution to journalArticle

Open Access

Stool bacterial load in preterm infants with necrotising enterocolitis

Abdulkadir, B., Nelson, A., Skeath, T., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Embleton, N., Berrington, J. & Stewart, C., 16 Feb 2016, In : Early Human Development. p. -

Research output: Contribution to journalArticle

Open Access
99 Downloads (Pure)

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, C., Embleton, N., Marrs, E. C. L. E., Smith, D. P., Nelson, A., Abdulkadir, B., Skeath, T., Petrosino, J. F., Perry, J. D. J., Berrington, J. & Cummings, S., 29 Dec 2016, In : Microbiome. p. -

Research output: Contribution to journalArticle

Open Access
File
Necrotizing Enterocolitis
Health
Metabolomics
Bifidobacterium
Premature Infants
2015

61 Comparison of two chromogenic media for isolation of Staphylococcus aureus from respiratory samples from patients with cystic fibrosis

Preece, C. L. C., Perry, A., Jones, A. L., Cummings, S., Bourke, S. J. & Perry, J. D. J., 2015

Research output: Other contribution

Open Access

A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients

Tariq, M. A. M., Everest, F. L. C. F., Cowley, L. A., De Soyza, A., Holt, G. S., Bridge, S. H., Perry, A., Perry, J. D. J., Bourke, S. J., Cummings, S., Lanyon, C., Barr, J. J. & Smith, D. L., 18 Feb 2015, In : Frontiers in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Cytomegalovirus and other common enteric viruses are not commonly associated with Necrotizing Enterocolitis

Skeath, T., Stewart, C., Waugh, S., Embleton, N., Cummings, S. & Berrington, J., 31 Aug 2015, In : Acta Paediatrica. p. -

Research output: Contribution to journalArticle

Open Access

Development of a novel kinetic model for the analysis of PAH biodegradation in the presence of lead and cadmium co-contaminants.

Deary, M. E., Ekumankama, C. C. & Cummings, S., 11 Dec 2015, In : Journal of Hazardous Materials. p. 240-252

Research output: Contribution to journalArticle

Open Access
biodegradation
PAH
cadmium
kinetics
pollutant
Open Access
Soil

Evaluation of a new chromogenic medium, chromID OXA-48, for recovery of carbapenemase-producing Enterobacteriaceae from patients at a university hospital in Turkey

Zarakolu, P., Day, K. M., Sidjabat, H. E., Kamolvit, W., Lanyon, C., Cummings, S., Paterson, D. L., Akova, M. & Perry, J. D. J., 2015, In : European Journal of Clinical Microbiology & Infectious Diseases. p. -

Research output: Contribution to journalArticle

Open Access

Gut bacteria and necrotizing enterocolitis: cause or effect?

Stewart, C. & Cummings, S., 2015, In : Trends in Microbiology. p. -

Research output: Contribution to journalArticle

Open Access

Gut microbiome variations during hematopoietic stem cell transplant in severe combined immunodeficiency.

Lane, J. P., Stewart, C., Cummings, S. & Gennery, A. R., 2015, In : The Journal of allergy and clinical immunology. p. -

Research output: Contribution to journalArticle

Open Access

Metabolomic and proteomic analysis of serum from preterm infants with necrotising entercolitis and late-onset sepsis

Stewart, C. J., Nelson, A., Treumann, A., Skeath, T., Cummings, S., Embleton, N. & Berrington, J., 2015, In : Pediatric Research. p. -

Research output: Contribution to journalArticle

Open Access

Preterm gut microbiota and metabolome following discharge from intensive care

Stewart, C., Skeath, T., Nelson, A., Fernstad, S. J., Marrs, E. C. L. E., Perry, J. D. J., Cummings, S., Berrington, J. & Embleton, N., 24 Nov 2015, In : Scientific Reports. p. -

Research output: Contribution to journalArticle

Open Access
Metabolome
Neonatal Intensive Care Units
Critical Care
Anti-Bacterial Agents
Bacteroides
2014

Polymicrobial airway bacterial communities in adult bronchiectasis patients

Purcell, P., Jary, H., Perry, A., Perry, J. D. J., Stewart, C., Nelson, A., Lanyon, C., Smith, D. L., Cummings, S. & De Soyza, A., 20 May 2014, In : BMC Microbiology.

Research output: Contribution to journalArticle

Open Access

Proportionate reduction in uncertainty of late onset infection in preterm infants by neutrophil CD64 measurement

Berrington, J., Hearn, R. I., Hall, C., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Fetal & Pediatric Pathology. p. -

Research output: Contribution to journalArticle

The nasopharyngeal microbiota: an important window of opportunity

Berrington, J., Cummings, S. & Embleton, N., 2014, In : American Journal of Respiratory and Critical Care Medicine. p. -

Research output: Contribution to journalArticle

The neonatal bowel microbiome in health and infection

Berrington, J., Stewart, C., Cummings, S. & Embleton, N., 2014, In : Current Opinion in Infectious Diseases Journal. p. -

Research output: Contribution to journalArticle

2013

Bacterial and fungal viability in the preterm gut: NEC and sepsis

Stewart, C. J., Nelson, A., Scribbins, D., Marrs, E. C. L., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., Jul 2013, In : Archives of Disease in Childhood - Fetal and Neonatal Edition. 98, 4

Research output: Contribution to journalArticle

Microbial Viability
Necrotizing Enterocolitis
Sepsis
Fungal RNA
Bacterial RNA
2 Citations (Scopus)

Determining the influence of environmental and patient specific factors on the polymicrobial communities of the cystic fibrosis airway

Nelson, A., Perry, A., Perry, J. D., Bourke, S. J., Cummings, S. P. & De Soyza, A., 1 Apr 2013, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 103, 4, p. 755-762 8 p.

Research output: Contribution to journalArticle

Cystic Fibrosis
Fungal DNA
Bacterial DNA
Lung
Denaturing Gradient Gel Electrophoresis
67 Citations (Scopus)

Development of the Preterm Gut Microbiome in Twins at Risk of Necrotising Enterocolitis and Sepsis

Stewart, C. J., Marrs, E. C. L., Nelson, A., Lanyon, C., Perry, J. D., Embleton, N. D., Cummings, S. P. & Berrington, J. E., 30 Aug 2013, In : PLoS ONE. 8, 8, e73465.

Research output: Contribution to journalArticle

enterocolitis
Necrotizing Enterocolitis
Human Milk
Sepsis
digestive system
2012
26 Citations (Scopus)
78 Downloads (Pure)
Open Access
File
nitrogen-fixing bacteria
crop management
bacterial communities
Crops
Bacteria
14 Citations (Scopus)

Polymicrobial challenges to Koch's postulates: Ecological lessons from the bacterial vaginosis and cystic fibrosis microbiomes

Nelson, A., De Soyza, A., Perry, J. D., Sutcliffe, I. C. & Cummings, S. P., 1 Oct 2012, In : Innate Immunity. 18, 5, p. 774-783 10 p.

Research output: Contribution to journalArticle

Bacterial Vaginosis
Microbiota
Cystic Fibrosis
Communicable Diseases
Coinfection
2011
11 Citations (Scopus)

Analysis of the microbial community and geochemistry of a sediment core from Great Slave Lake, Canada

Lim, J., Woodward, J., Tulaczyk, S., Christoffersen, P. & Cummings, S. P., 1 Feb 2011, In : Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 99, 2, p. 423-430 8 p.

Research output: Contribution to journalArticle

Slaves
Lakes
Canada
Carbon
Climate
63 Citations (Scopus)
85 Downloads (Pure)

Diversity and activity of free-living nitrogen-fixing bacteria and total bacteria in organic and conventionally managed soils

Orr, C. H., James, A., Leifert, C., Cooper, J. M. & Cummings, S. P., 1 Feb 2011, In : Applied and Environmental Microbiology. 77, 3, p. 911-919 9 p.

Research output: Contribution to journalArticle

File
nitrogen-fixing bacteria
crop rotation
Soil
Bacteria
plant protection

The role of plant growth promoting rhizobacteria in sustainable and low-input graminaceous crop production

Cummings, S. P. & Orr, C. H., 2011, Plant Growth and Health Promoting Bacteria. Maheshwari, D. K. (ed.). Heidleberg: Springer, Vol. 18. p. 297-317 (Microbiology Monographs ).

Research output: Chapter in Book/Report/Conference proceedingChapter

plant growth-promoting rhizobacteria
crop production
crop yield
crops
rhizosphere bacteria