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Mobilizing the Biocatalysis Community for Reproducible and Reusable Data Collection

  • Sérgio M. Marques
  • , Joan Planas-Iglesias
  • , Jan Velecký
  • , Milos Musil
  • , Yasuhisa Asano
  • , Tomasz Borowski
  • , Vânia Brissos
  • , Marco Cespugli
  • , Koar Chorozian
  • , Mohammad Dadashipour
  • , Elif Erdem
  • , Erica Elisa Ferrandi
  • , Konstantinos Grigorakis
  • , Anna Kluza
  • , Janina Lawniczek
  • , Konstantinos Makryniotis
  • , Daniela Monti
  • , Bettina Nestl
  • , Anna C. Ngo
  • , Efstratios Nikolaivits
  • Stefania Patti, Christina Pentari, Carolina F. Rodrigues, Tobias Schopper, Karolina Seweryn-Ożóg, Maciej Szaleniec, André Taborda, Mateusz Tataruch, Dirk Tischler, Evangelos Topakas, Jingyu Wang, Patrycja Wójcik, Agnieszka M. Wojtkiewicz, John M. Woodley, Olga Zastawny, Lígia O. Martins, Marco Fraaije, Jürgen Pleiss, Santiago Schnell, Jiri Damborsky, Stanislav Mazurenko, David Bednar

Research output: Contribution to journalComment/debatepeer-review

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Abstract

To achieve further breakthroughs in the fields of biocatalysis, protein engineering, metabolic engineering and synthetic biology, enhanced reporting and standardization of high-quality experimental data are essential to improve data availability, comparability, and reuse. Our experience with the specialized Pan-European COZYME community network enabled us to gather a significant amount of data on enzyme stability, solubility, and activity, and it taught us several valuable lessons. For effective long-term improvements, multiple changes must be in place. Here, we propose several actions that can promote such a shift in the scientific culture. Some examples include the default proceedings for publishing data in scientific papers, along with the standardization and FAIRness of the published data. Sustainability requires governance beyond a single project cycle and funding models that combine modest community membership fees with competitive grants focused on interoperability. An example of this model is ELIXIR (https://elixir-europe.org/), an intergovernmental organization that brings together life science resources from across Europe, coordinating them so that they form a single infrastructure. ELIXIR is partly funded through state member contributions (often channeled through member organizations) and also supported by European and international grants. The successful implementation of some of the changes proposed here will permanently benefit the entire scientific community and biotechnology industries.

Original languageEnglish
Pages (from-to)8858-8868
Number of pages11
JournalACS Catalysis
Volume16
Issue number10
Early online date5 May 2026
DOIs
Publication statusPublished - 5 May 2026

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